- Fan, H., Ives, A., Surget-Groba, Y., Cannon, C. (2015). An assembly and alignment-free method of phylogeny reconstruction from next-generation sequencing data, BMC Genomics, 16:522
- Fan, H., Ives, A., Surget-Groba, Y. (2018). Reconstructing phylogeny from reduced-representation genome sequencing data without assembly or alignment, Molecular Ecology Resources, 18(6), 1482–1491 Full text
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Carlos, C., Fan, H., and Currie, C. (2018). Substrate shift reveals roles for members of bacterial consortia in lignocellulose degradation. Frontiers in Microbiology, 9:364
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Khadempour, L., Fan, H., Keefover-Ring, K., Carlos-Shanley, C., Nagamoto, N.S., Dam, M.A., Pupo, M.T. and Currie, C.R. (2020). Metagenomics reveals diet-specific specialization of bacterial communities in fungus gardens of grass-and dicot-cutter ants. Frontiers in microbiology, 11.
- Barcoto, M.O., Carlos-Shanley, C., Fan, H., Ferro, M., Nagamoto, N.S., Bacci, M., Currie, C.R. and Rodrigues, A. (2020). Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment. Scientific reports, 10(1), pp.1-13.
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Silvaraju, S., Menon, N., Fan, H., Lim, K. and Kittelmann, S. (2020). Phylotype-Level Characterization of Complex Lactobacilli Communities Using a High-Throughput, High-Resolution Phenylalanyl-tRNA Synthetase (pheS) Gene Amplicon Sequencing Approach. Applied and Environmental Microbiology, AEM.02191–20.
- Kozlowski, G., Gibbs, D., Fan, H., Frey, D., and Gratzfeld, J. (2012) Conservation of threatened relict trees through living ex situ collections: lessons from the global survey of the genus Zelkova (Ulmaceae). Biodiversity and Conservation, 21:671-685