Open lab note - Ficus RNA-seq
Open lab note
Bioinformatic tools
Molecular Biology
Open lab note - KEGG Pathway
Toastmaster speech
Open lab note - OS X
Open lab note - R
Open lab note - Python
R
Toast Master
python
Stats
Phylogeny
AAF
phylogeny
Open lab note - Sanger sequencing
Machine Learning - Image Classification -Tensorflow
unix
Metagenomics
linux
paper
Mac
metagenomics
amplicon-sequencing
conda
lab note
liana
bash
machine learning
statistics
single-cell-sequencing
herbivory
BEF-China
ecophysiology
high-performance liquid chromatography
leaf toughness
plant defence
plant polyphenols
Prussian blue
tannins
trade-off
trait evolution
plant-defence
root
microbiome
review
amplicon
network analysis
stats
mamba
GWAS
bioinformatics
PopGen
- Open lab note - Ficus RNA-seq
- Blast ouput in xml format
- Annotate my transcripts
- Open lab note
- How to keep your scripts sync on multiple device (using git)
- How to get to know a gene
- Bioinformatic tools (continuously updated)
- Bioinformatic tools
- How to keep your scripts sync on multiple device (using git)
- Bioinformatic tools (continuously updated)
- Molecular Biology
- How to get to know a gene
- Open lab note - KEGG Pathway
- KEGG Pathway Analysis via Cytoscape
- Toastmaster speech
- Ice breaker
- Open lab note - OS X
- zcat vs gzcat
- zcat vs gzcat
- Open lab note - R
- All the applies
- Open lab note - Python
- Ultrametric tree
- Python 3.*!
- R
- Code Snippets
- All that devs
- How To Store Your Data In A Dataframe
- system() Vs. system2()
- Toast Master
- To See the Unseen
- python
- Code Snippets
- When Conda env Goes Crazy
- Running Picrust2 - Advanced
- Install and Running Picrust2 - Basic
- How to set up Jupyter with Python 3.6 on a remote sever (Ubuntu 16.04)
- itertools for whatever text format
- Cast Reshap Aggregate and Their Equivalent in Pandas
- Stats
- NMDS plot with drivers
- Mean Median and Mode
- Phylogeny
- How to add boostrap value to your tree
- Mac OS X
- Tree structure
- AAF
- NMDS plot from distance matrix
- phylogeny
- So you have the genome, and you still want the marker genes? II
- So you have the genome, and you still want the marker genes?
- So you have the metagenome, and you still want the marker genes?
- Open lab note - Sanger sequencing
- Batch process forward and reverse 16s sanger sequences
- Machine Learning - Image Classification -Tensorflow
- Anna Karenina principle in image classification
- unix
- Stack Overflow
- Metagenomics
- Sequencing effort for metagenomic studies
- linux
- The IT Crowd
- paper
- Lunch Break
- Mac
- How to share a hard disk with other users
- from HUMAnN2 to HUMAnN3-Alfa
- Hotkey on Macs
- metagenomics
- Confidence scoring in kraken2
- amplicon-sequencing
- Running Picrust2 - Advanced
- conda
- When Conda env Goes Crazy
- lab note
- How to build a kraken2 database from scratch
- liana
- 2019 Nat Commun Bulk tissue cell type deconvolution
- How to build a kraken2 database from scratch
- bash
- Code Snippets
- machine learning
- SVM
- statistics
- SVM
- single-cell-sequencing
- 2019 Nat Commun Bulk tissue cell type deconvolution
- herbivory
- 2014 Koedoe Wigley
- 2018 Oecologia Wigley
- 1999 Oikos Protein Competition Model
- 2016 Oikos Trade-offs between architectural and low nutrient strategies
- BEF-China
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- ecophysiology
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- high-performance liquid chromatography
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- leaf toughness
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- plant defence
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- plant polyphenols
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- Prussian blue
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- tannins
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- trade-off
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- trait evolution
- 2015 J of Ecology Trade-offs between physical and chemical carbon-based leaf defence
- plant-defence
- 2014 Koedoe Wigley
- 2018 Oecologia Wigley
- 1999 Oikos Protein Competition Model
- root
- 2022 JIPB Bai
- microbiome
- FAPROTAX
- Yuan 2021 Nature Climate Change
- 16S otu table corrected for gene copy number
- How to merge phyloseqs
- nifH database for dada2
- 2022 JIPB Bai
- review
- 2022 JIPB Bai
- amplicon
- FAPROTAX
- 16S otu table corrected for gene copy number
- How to merge phyloseqs
- nifH database for dada2
- network analysis
- Yuan 2021 Nature Climate Change
- stats
- Goodness of Fit
- LD Prunning
- Hardy-Weinberg Equilibrium
- Variable, Covariables and Covariates.
- One Liners for StatsQuest Fundamentals
- Variance, Covariance, Correlation, Variation and Covariation
- Deterministic vs Stochastic.
- ANOVA, simple linear regression and t-test
- How Should Normalizatin Happen
- Ordination - nMDS, PCoA, CA
- mamba
- How to activate mamba in R
- GWAS
- Kinship matrix (II) -- GRM
- Heritability and how to estimate
- Genotype Decode
- Kinship matrix (I) -- A Matrix
- What does MONOELLEIC mean in a GLnexus generated VCF file
- SNP Filtering - Basic Principles
- Genomic Estimated Breeding Values
- bioinformatics
- Why doesn't braker make a prediction in the regions with hints?
- Inferring Assembly Quality From Mapping Stats
- PopGen
- Is Population Genetics Important For Quantitative Genetics?